Scaffold Ga0068877_10253411

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10253411
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F024477	Metagenome / Metatranscriptome	205	Y
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_102534112	F039941	N/A	MDIETLALRLEEIKLSRIEVLEEKKVLAEELLDGKLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQPS*
Ga0068877_102534114	F024477	N/A	VSYDIIKNSSKASSFELLIKNITLIEKVEDFYRELDQITSYRFNCHGKPDPDIYFMKDIIKIKLIELERLQAQRINKLIKLSQ*
Ga0068877_102534115	F017597	N/A	MKKIFGSEKLLIKLAIKRKELIKIVKSSKSTLIKTEMITRILITALKAKQVIVIRFQVNRTNNLQIWGQ