Scaffold Ga0068877_10140575

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10140575
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1483
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_101405752	F003603	AGGCGG	MKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVMEVVAWIVEKQAERYRREVANNGTVCEGLIIANMLDKVIDKIKVSNDLKSVQLPITPKERGEFVKSLPNIEEKNYRYSWLHETNNTNRVTIDHPFI*
Ga0068877_101405753	F000852	AGGA	MATKREYLKSKGITVGARGRFSAAAKQALQEATTNGVTFEAEKQAPKK*
Ga0068877_101405754	F024786	GAGG	LTTYRVFGNKYQNYYTIVDAADEFQAVDIANALPETEWNSIPTDDVIEATDVYLNEDTSMELQLNI*
Ga0068877_101405755	F001019	GAGG	MSYGPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLDNL*