Scaffold Ga0068877_10078898

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10078898
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2103
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025941	Metagenome / Metatranscriptome	199	Y
F057312	Metagenome / Metatranscriptome	136	Y
F097192	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_100788982	F025941	GGAGG	MALPDYIEVTQGTAIIWGESGASGVTAVCSLDALANGAARQGASVDLGANFADEYLVYFSVETGTAPTAGTTAEAYLVSSYDNTLWPAKVTGSDGAYTLGTSDANLRQAGPPVVSLVATNDGNTVLTQAPSIWRPRGRYVTCIIDNNLGQAFRDETTATDNGSRLILVPRRTVIND*
Ga0068877_100788984	F057312	AGGGGG	MFGLYSWLQQTWSSLAEAADMSDANTPTEPEPVGCEIFQDALDQLTDELDTICDRIDFNLEQLWICRQAKAQAFGGIDANRANMTRQSISGAQRLLQTARSRVHQVIGEIEIVSTPPAQQQAVTE*
Ga0068877_100788985	F097192	GGA	MDDQAQPKDDSEDSEIVHFTMPGLSIRITNKTLETIGRHTGKSWMAVVFAFAAAIIIYALNGFVRGGQ*