Scaffold Ga0068877_10062626

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10062626
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2414
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_100626261	F082666	N/A	AEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNEA*
Ga0068877_100626264	F001019	GGAGG	MSYEPSLEILEVNYSCSPGGVDMFEIYDRLDDDTMSIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELLANV*
Ga0068877_100626265	F024786	GAGG	LPTYRIFGTKYINYYTILEAADEYEAVDLANSLPETAWNSVESDDVIEATDIYLNEDTSMDLQLNI*
Ga0068877_100626267	F003603	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLADQPIYTVDRVMEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKMIDKIKVSNDLQSVKLPITPKERGEFIKSLPEVKEQSYRYSWLHETNNGSNANINVTPVI*