NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10004457

Scaffold Ga0068877_10004457


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10004457 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10940
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F003067Metagenome / Metatranscriptome509Y
F003308Metagenome / Metatranscriptome494Y
F005088Metagenome / Metatranscriptome412Y
F059776Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0068877_1000445716F005088GGAVGRGSFGYLIAQIAVETGIAPQYLLDLDDVMFKNILKVLTDRAKAVQDANRGRKRPRA*
Ga0068877_1000445721F003308N/ADSAPVVGTALVNNVATVMIANPGLFTTGQSVTVAGAGSTFNGTYTITGTIPFSAGTSNLLPAFNFQLNYYQYPQGFSFIQYAKTAADQNFRRVLPSGTMTGDDTKTQAYANTPAINAAALMLAENIWTSRFSTQNGGVSVDGYSPSPFKMSNTLMASIRGLLAPYLSPNAMVG*
Ga0068877_100044575F059776AGGMLADIAVITLTVLIVGLFMLAAYRTGYREGHGDGYLRGRNIAKALKEVTK*
Ga0068877_100044576F003067AGGMNEAQTLLAVALGICSLAAVGVGLVRHLVKFYLSELRPDGNGGHNLRGRVERIEGQVDRIYEMLLEDRLKR*
Ga0068877_100044577F002269AGGAMNKKQLQAAAYSYGRAALASVAALYISGITDPKVLANAFLAGLIGPFLKALQPNEKQFGVGAK*
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Institute for Fundamental Biomedical Research
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