Scaffold Ga0068877_10003961

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10003961
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11695
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F053106	Metagenome / Metatranscriptome	141	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000396128	F060726	GGA	MYRNVLLTDKEIALLKSVISQTLNDKVSIDRNNLTIIHNRLRQIKPINTFNQTVNYGKWA
Ga0068877_100039616	F000325	GGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLNNGCYAEATENQYKNARVAGFANIVTEKNKIRAMILDAKRRQKSIRWHERGDWFLNGELDLEYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDEKIAPKRPRSKKKADAWRASLPKLVVLNGTKFVTCPEIRRGRATITCTGTKDSIECNLCVKGLGNVLFPAH*
Ga0068877_100039618	F053106	GGAG	MPKYYVASGTLRIMVSRKDALEASIYGLMQTNKFDTIDEYFYVDERGYRDYVSADPSTNVVPTKSIVRAAGWELSRDDDPLP*