NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10001047

Scaffold Ga0068877_10001047


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10001047 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23276
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010533Metagenome / Metatranscriptome302Y
F015720Metagenome / Metatranscriptome252Y
F027822Metagenome193N
F034152Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0068877_1000104711F015720GGAMKNIKTTAAGIGAILAAIGGALYALFDNDPSTNVDLTVTISTITVGIGLIMAKDAIGASPSEPPKQ*
Ga0068877_1000104715F010533AGGMRTVTYDYVLQRASELTGRVFSSLTTEESNMFRTFISMSLRSAWECFDWPEQTVYQQEFFAPTYTASATYSAGDVVYFTVEQKYYQWVNATPGAGQLPTLSGPGGTLNAIYWAEAEPDYGNSSGNYSDSVTYSLGNIVLYPLTQEYYQLYSLAPAGTVPTNTAYWGRLNKFLRNIEQMTNPDGTARTVTIGEAFSVWPGDPRVSWRQQEVSYTFTDGGILVAEQLPYVWLEFRKSPPLLASAAEATAYAFPYRFSEVCALKAAGQMLRVDGKVDLGNEFLQLGEVELTKEIDKVATQEKYIRQIIVPGR*
Ga0068877_1000104722F027822GGAVSSKLSQLYFDAAGGNQDALVFVTAFHAYCHAIDDLVDGDVPMTAESLLDVLMQANALYATPFWINNWFRLQPIVAQICNTYADSVAWEKAEESWKKQTADVIRLCGNDMITQVAWIVGGYKHMRSISLRLREFAYHSQHS*
Ga0068877_100010477F034152GGAMRLGLGIGLFRDQLPGGGGGGADYPIARRDLLQEDEDFILLENGTDKIVITFGTFDSLDLEDGDFLLQEDADKLIIQAN*
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