Scaffold Ga0070737_10002996

Overview

Basic Information

• Taxon OID: 3300005524
• Scaffold ID: Ga0070737_10002996
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19023
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070737_1000299612	F031889	AGGAG	MYGDIPAEGITIRVPNPPKTAHLRLPTSQEMLDRLAQQKSIRRTIGRRKSQTEFVPNAKADLDLFNRIRLDKDGPEFDEFEAGSAISKLTFCDVTDCERAGDEDRITLKTPFGVTVHTVKIPTQRDITIYRRTVVSSTDLPHGQEELRYRIEPAVELYDSVVSKIEGYAASFKPADVPPHHKSAVVVELVQAIDDLDPALDPNL*
Ga0070737_1000299614	F030458	GGAG	MPFTAKIKRARFVLGPFTSEDMLAIGNVLRDSIAERIGSGLNVNDETAKELKPGRNGRRGYPDYKKARGLQPIRDWFWTGRTMRSLKVKSASENQAVIGFVDPNADRIAHVNNLREKQFGVSPKDRQALNSAVLAVLRQARAIRVRRAA*
Ga0070737_100029969	F025048	GGCGG	MLNNGPIVDAIVATLQAIPELAAAMTVLDANQNPVCRIYAHHYRLGAEYRLAERIYKMPAPSMLVAWDGDQGGNFDGQTICKHRFNVYFRMGNAAGLSDPVDYEQLWWIACNQPPTGSQVNIRYMQLYPGLDIMDTPGVAHALDEDLQDRFVGTFVIPEIGDN*