Scaffold Ga0066865_10141638

Overview

Basic Information

• Taxon OID: 3300005523
• Scaffold ID: Ga0066865_10141638
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 888
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066865_101416382	F067640	GGAG	MPIEVGCLLKNRFNDTLWLALDEIAESVLIVNQKTNYKMWAEKTHFEVIG*
Ga0066865_101416383	F005547	GAGG	MKVWVMQGSYEGELFSSVHLTQKGCALACIADVLEFLGVEDNDTALSVMNNVYSYTETDGEQTEALEWDYEKMKKMSSKELWKIFQDWCEISWDRFANQGYNIDAQPMEIQA*