Scaffold Ga0066865_10125741

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066865_10125741

Scaffold Ga0066865_10125741

Overview

Basic Information
Taxon OID	3300005523 Open in IMG/M
Scaffold ID	Ga0066865_10125741 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	941
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001656	Metagenome / Metatranscriptome	656	Y
F004235	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066865_101257411	F004235	N/A	DALIGEQDFIGKAITMISVDWDVDADGSREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTVTGTLAQVLTEDIINLGTVDSINFGSGTVAVTLKTTFKYA*
Ga0066865_101257412	F001656	AGGAG	MPITRNRSTDMIRRQSFNGKGLTFIEVIFDDEFPGSATTPESNDSVFDRVTKVVNKNGTLLAASYRLAAKATDNDAAEVASILANESIDSYQYIVEGTPGQFNAADSAGDTNIDVTATIVADAEADLETDIRAVLDGSDSAGSLQVKVRTLLPEGHVNGDANTFVGMFDQRGDA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.