Scaffold Ga0066865_10028619

Overview

Basic Information

• Taxon OID: 3300005523
• Scaffold ID: Ga0066865_10028619
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1861
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F014744	Metagenome / Metatranscriptome	260	Y
F101291	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066865_100286192	F014744	AGGAGG	MYNNLNQKLSELQSGNYLIKVKSIGDRRPNKYYSKEYFVTIKYQVTDLNNPKRKFGVIVSGMGSKPIELNVDRELLPTNYFTWENFDEVLFDRLSRTQKSINEEGYYPKDRDTGRVVVK*
Ga0066865_100286195	F001086	AGGAGG	MTDKCTGWAIVTTTERPDGTWYTETITDVDKQTASYVDDFLTEYYEDKEKSKHG*
Ga0066865_100286196	F101291	AGGAG	MAKIDTINTSGNNWVGWNYKSRADEIIELVLDEVNDMLKKNKIKINYQYNDDNEEGWDYFLELDKEDICQ*