Scaffold Ga0066862_10296767

Overview

Basic Information

• Taxon OID: 3300005521
• Scaffold ID: Ga0066862_10296767
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 524
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → unclassified Opitutales → Opitutales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011090	Metagenome	295	Y
F055713	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_102967671	F055713	N/A	MDKEINGHLYIANDNLKRIADALEEILRLVKADQEKMEKYRKENDGDK*
Ga0066862_102967673	F011090	N/A	MKRIKHNDLTHYFLRPHSELPQAYLASCEKFFRELGEKRNKFQASSSNATRHNLFTEIEAASTKRQASSTKQQAPAGLNDATIKI