Scaffold Ga0066862_10087331

Overview

Basic Information

• Taxon OID: 3300005521
• Scaffold ID: Ga0066862_10087331
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F019662	Metagenome	228	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_100873311	F019662	AGGAGG	MTEQEKKDFEWASGYYLYDDLDADWVNWDEEKLHNEIEQLAWQPFEHWEGDKLYIEIEKLASGVREYIKENK*
Ga0066862_100873312	F002928	AGGAG	MKNILVQFDCRIGDYEHQSYYIFNKKKSEWGYCKEFWSINKRDSNCLKENMFWDNEMMNAISVYSETEITNKQADTLQQLGVA*
Ga0066862_100873314	F058216	AGGAGG	MPIRKTVGQLLVENHWSVQRLAVAINITKEDIKKWEKLNKQYKKYKR*