Scaffold Ga0066862_10059416

Overview

Basic Information

• Taxon OID: 3300005521
• Scaffold ID: Ga0066862_10059416
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_100594161	F105878	AGGA	MKVGQIIKLTPQGLKSFAPGIRKRLDGQIGLVVKQKYDLSYKLDQEKLPDRIKVYPSLVRFDELEDILGVNDNTVMVFPDQAEILS*
Ga0066862_100594162	F069451	GGAG	MKPGDLVRIRKSAIDAYSTLWFIDLAESKAPLLLMEKLSKQHWKVMKPDGTDCFISEHKLTTRMW*
Ga0066862_100594163	F021674	GAGG	MKRETYNSRLRSNPEDIPVGSLLRVKKWCRNNDTIKNNGEFAILVERPGGTYISHDIIFPNGARTIFIPMNWEVVSHAR*
Ga0066862_100594164	F006383	GGAGG	MHDKMWKVQQPGTLLRARHSARRGQLALVLTESYPGVIPTNGYPPRRYVKMQILSTGERIEESLTNANNCWDIVKQK*