Scaffold Ga0066862_10006348

Overview

Basic Information

• Taxon OID: 3300005521
• Scaffold ID: Ga0066862_10006348
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4638
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_1000634813	F022282	GGA	VNPSFRYQLGDLVEFKRTARVTEEYIDVEKVSGIVVEQRYVFTADNKFKVRTPEKDYWVGADHLTLLSSGTK*
Ga0066862_100063483	F006383	GGAGG	MLYDKMWKVQQPGTILRARHSARRGQLALVLARACAGPRPSNGYPPTQYVKMQIVSTGERFEESLTNANNCWDIVSEP*
Ga0066862_100063484	F021674	GAGG	MERETYNTRLKSNPENIPVGSLLRVKKHCRKNVTIRQNGEYGLLATTINNGKYITHDVLFPNGTRCIYMPLNWEVVSYAVR*
Ga0066862_100063485	F069451	GGAG	VKPGDLVRIRKTAIDAYSTLWFIDLADRKAPLLLMEKLNKQHWKVMKPDGTDCFISENKLTTRMW*
Ga0066862_100063488	F006867	AGGAG	MLYGKELVESIQKRSRIQPGMLVNSINPGNGIKKLALVVELSPGCKFDRDYQEAEEHIFYRCEPFDGTPAFVDYVCNMEQVS*