Scaffold Ga0066864_10016213

Overview

Basic Information

• Taxon OID: 3300005520
• Scaffold ID: Ga0066864_10016213
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2362
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066864_100162133	F013896	N/A	MICDKCNGNGFTLVKGETIQCKKCLSSGEIKETLTPPKYSDDDLTNIYQTLYEASLKLSESNDPGMVAASLMAIGSRIYKTILTSEDYDKMMKKIINTDVQPFKKETLQ*
Ga0066864_100162134	F009536	N/A	MKKDVMKQALELMPGQLKEEIKSNLENPKSYTRLFVKILEKIKDAKKESPELTALKNAILKINKENYSKITEQSVSKTPSALNARDIEYWLQTAKKKDQLIYYTGGTFDKRSVKDESVFRKARNLAMDYDNISFKNKKYQYRGSVKGEWGCNYKNIITLVQKKVAKEQRDKIWDEDKKEYVPGNIISYPIYNYIIIKQ*