Scaffold Ga0077119_10005999

Overview

Basic Information

• Taxon OID: 3300005519
• Scaffold ID: Ga0077119_10005999
• Source Dataset Name: Combined assembly of arab plate scrape CL_Col (Combined Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13845
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012876	Metagenome / Metatranscriptome	276	Y
F049748	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077119_1000599914	F012876	AGGAG	MNTNTNRFVALALSAAMALGIVAAVNGLANAQYAAADSQEMARYGQAHVAVQHVTIVGRHAA*
Ga0077119_1000599915	F012876	AGGAG	MTTTANRLAAFTLSALATFSVVFGVNAMANSQYAAADSQEMARYGQTHVAVQHVTVVGRRADA*
Ga0077119_1000599916	F049748	GAGG	MDIKQDPNAIPNFNAGGRVGELQPNEPEQAQSSVELDSTAGGDGAASEAAQHESLLDDGDAPPATRGDVSKKGGGAIDGLVGAP*