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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005518 Open in IMG/M |
| Scaffold ID | Ga0070699_100070027 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3048 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004003 | Metagenome | 457 | Y |
| F004349 | Metagenome / Metatranscriptome | 442 | Y |
| F061378 | Metagenome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070699_1000700271 | F061378 | AGG | VPLRRLLLAVGAAVLAAGCGVPTPAAPPSASEVLAKPQQSDLKDAHFNVTGKITDNGTTVELSGDGALTYKPKLAGRFQFTTNVGGQSVTIKEISLDGTNYGMTPASPKWVATKSTTGLDPSAFAGASDQKYVGEENLPQGKAWHA |
| Ga0070699_1000700272 | F004003 | GGA | VIAKLIRIGVALAAVGLLGACGGPGTPLGPPSAKDILAKPLHTNLNDAHFLVSGKFVSPSPGVSVDVHGDGAVVYKNPGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTSSGLGRDSFTGASDFAYVGEENLQSGKCWHAKAKDKDGNQFDGWIRESDGYPVKYEVTQQGNALTLSFDKYNTGESITAPPASQVVQG* |
| Ga0070699_1000700273 | F004349 | AGGA | VKTRTWLLLPISAIVVAGCGNSAAAPAKPPTAQEILAKPDAANVKDGHFTLVAHIVSGNIAFDATGDGIIVVKPQQASRFTMQTTIAGQPLKFEEIIIGGKEYDLSPDNPHWTVKPSTNSSNPSSFKGTDATYLGEETLPQGKAWHVKAKDDGGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |