Scaffold Ga0070699_100027026

Overview

Basic Information

• Taxon OID: 3300005518
• Scaffold ID: Ga0070699_100027026
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4949
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016134	Metagenome	249	Y
F039072	Metagenome	164	N
F053955	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_1000270264	F053955	GGAGG	MQVRNRTKRTHVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVVLPIIAFLLRPILATVAVLVGSVGSAFVQTGFYSVFGFAGLLIPILAVALGSIAFHYEWGAIVPWGYVLAGAVYYIVFSKGGTLLWLAPYIIVIASLPAALRIRDPYRLGLLALYTAMSEQVTLNVLSISLLNLTGAFWTGVAPLMFLERTIATIGGFAVIVALKSRLETRLELGHVLMEVK*
Ga0070699_1000270265	F039072	GAGG	MTLLGAETVVGGISLTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKESPRIIVADTWPVIRPRR*
Ga0070699_1000270267	F016134	N/A	MSKLVLTVELKALQDRSSEAIQFLKSKVEGKMRTKGSQLQIEGAKTKEVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHVVHEPERVGSPPTAPQTTPYYFPQTPVLAPEKKKKAKPKRKHE*