Scaffold Ga0070699_100009220

Overview

Basic Information

• Taxon OID: 3300005518
• Scaffold ID: Ga0070699_100009220
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8556
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004828	Metagenome / Metatranscriptome	422	Y
F005101	Metagenome / Metatranscriptome	412	Y
F007168	Metagenome / Metatranscriptome	356	Y
F015010	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_10000922011	F004828	AGAAGG	MRSKSDHAWRMAAECAKLAQRADEKDEREFYVRMRDSWISVANRYEFLNAVDEQGAPRERPRSAAGQYIPHPVSRSLERRRGSASRQGR*
Ga0070699_1000092204	F007168	GGA	MWQKIGYCRQKAAECAARAQEAADKDTRALFLKFRDSWLSAAHRYESLPATAPGETADRQPSFGPEPGAREWRWRPRARMDTTAERLGAC*
Ga0070699_1000092205	F005101	GAG	MKDELTTILDAMRAAQAELADYLVSADRNAELTIARLVGILDRREVVRAMRLLRALERPGGVPQRTLAQAS*
Ga0070699_1000092207	F015010	N/A	METATEYRRFAQECRRLARDAKTERHRKIMEDMARAWDRLASEAEREGSHALP*