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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005518 Open in IMG/M |
| Scaffold ID | Ga0070699_100007360 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9585 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000995 | Metagenome / Metatranscriptome | 810 | Y |
| F017532 | Metagenome / Metatranscriptome | 240 | Y |
| F103712 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070699_10000736011 | F000995 | GAG | MRTTDNGVTPRPGRPYRLPDDGPLPDLPLYERLIGDGIATADSQGTAVDHLTARRLAIWLAARPQSPVFAYGLVSFVETGAITHTLKTQLRIHARSGTHPDQPEAGRLLQYCIARGPDVGPIGENFAAACDQIDRADTMLKGLHNRARQGRTHPERARPEIDSPGPVALASRDPGTQTITLVLDAATASAAIFAIATHADEREAHIREVQSYGQTLPKGSYGRRNRQAIATRETRITTCLRAVEHAYRMAIERDAFSPPEPTRACRTPQHGADREIELD* |
| Ga0070699_1000073608 | F103712 | GAGG | MTDHRMNLDLITDMFGLLDRHGYTRGDNEHAGRAILLLGDLARIYEGSQDHPFGPYTGEIPPRPEPVPPELTHHDTVTVPTGEVKTLISALIIAADYKRDRAELCADCADQSCPDCEWRLRDAQAYDRAHVQLLQSAEASASAAASHPESAIQPAADREAGQ* |
| Ga0070699_1000073609 | F017532 | GGAGG | VTRPPDDSEPGRRPPDYVIVVAASDWTTDRYPAAASLTQALQASQDRHRDPEPDLEAEP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |