Scaffold Ga0070699_100000011

Overview

Basic Information

• Taxon OID: 3300005518
• Scaffold ID: Ga0070699_100000011
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 267738
• Total Scaffold Genes: 242
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (74.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040894	Metagenome	161	Y
F045409	Metagenome	153	Y
F061877	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_100000011126	F061877	GAGG	MGEEGNRGLKLFLEFWLLIGVLAAFNLYSYFRGGSKLFLVVGVIAVLAFIGWALFYIFYVRGKN*
Ga0070699_100000011197	F040894	AGGAGG	MTRIIPIVAVFLLLVGCDHKPGPVPAKAQKDPKVAAIEDRVAKTTTEGKQIIEKVLAMKPEVNEQNSTKTLGEIVDDYAKNKGAYNIAPIGWEAAQKKPLAGEKKGRWKVAFGYQDWQKQTLIAEWEYNLDTGKLYPFEKDNAPGFWTNEGTEPAKKGKK*
Ga0070699_10000001150	F045409	GGAG	MYCPTCSTHSTDGAKFCKACGLNLNVITQALNGGVAISDPIRDREFKRVRKQISDGIQGSAIGAALLLAAALPYFIMPLTPWIYTVSLLLALGGIVKLFRSVGSIVDAKVGQKLVDPSLQPRGTGGLSQSTPRASQRLGDQPRPAFTRPVSLENDSGSHQSLPEIPVDNMGRPLTGRINREHSSPLRAFDKDDDLMSKLRN*