Scaffold Ga0070374_10304637

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10304637
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 809
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F029021	Metagenome	189	Y
F075658	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_103046371	F075658	AGGAG	VSNVLELRNGTVKRTIFYEVSDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAKEVSP
Ga0070374_103046372	F011756	GAGG	MAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVAREKESK*
Ga0070374_103046373	F029021	GAGG	MKDLCQFCGWEIARVDWYHRYNNKLICDNCVMDTMSEREREGANG*
Ga0070374_103046374	F006842	GAGG	MKAIPAICGDHLVPITECDCLSYMREIASSAERLIQLTKEREEMK*