Scaffold Ga0070374_10064100

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10064100
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F023347	Metagenome / Metatranscriptome	210	Y
F033433	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_100641003	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVAIQEALNKGVTFTDPQPVTKKAK*
Ga0070374_100641006	F033433	GGAG	MYDKPSLEILEVNYGISPGGIDEFEVYSLDERDHSSPPIFSSPVLEESVRFCYNLGKDFTVRTLAQWEEKELAYEASR*
Ga0070374_100641007	F023347	N/A	GELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYALSFAIGAKNV*