Scaffold Ga0070374_10058938

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10058938
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F007644	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_100589382	F007644	N/A	MTKSSYFLEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERYNNDNI*
Ga0070374_100589383	F000263	AGG	MTISDDMFTDKESLVLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIAREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARE*
Ga0070374_100589386	F000441	AGGAGG	MKMSDRYLNDQLDKAQKLLWGGSETENIEAHNIIAKLIKDREDLIEHS*
Ga0070374_100589387	F000852	GGA	MTTKREYLKQQGITVGARGRFSGAAKVALQEALTKGVTFTEEPKVVKAK*