Scaffold Ga0070374_10022282

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10022282
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3233
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009334	Metagenome / Metatranscriptome	319	Y
F042755	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_100222821	F009334	N/A	QVEGKTVKVGDWVGFKADVEQLGQIIEIKSSYMGQALVLENKAGFHGDYIGGSTITTEQARDCWLEG*
Ga0070374_100222826	F042755	AGGAG	MFDGMIKIVLAIVLIVVLLAIGPWLVIWALNTMFPLLAIQFTFWTWCAVVILGTFFRANVNVKRKD*