Scaffold Ga0070374_10006788

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10006788
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5434
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F040536	Metagenome	161	N
F090097	Metagenome	108	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_1000678810	F040536	AGGAG	MDKIGKVIAFHPVRSGLKLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN*
Ga0070374_100067883	F004110	GAG	VTELHPIVYELAPSVAYAIHRRYKHWVEKDDITQECIAWAITRNAYITEQMSVEDAKQLEYNQKRIAYQMKRAAERYVRKEKANKSGYQLSDEAYYETLMLGQLLPFVIASVIDGTVLEQAQEMIRDGQPRGSSSPAEGGNLLASLIDIKKAFLELDQKDQIILRMRHHDHATLQQVAQFLECAISTADRRCTHSLRRLQEKLGGETPWR*
Ga0070374_100067885	F100350	AGGAG	MIYSFKCQCGSTRDIEQSIHAEIVEPICTDCHQSMSRSWSSPAITFKGPGFYTTDN*
Ga0070374_100067888	F090097	GGAGG	MTQTSRRIETAKRAAVQYRNYRRARDRALTRLSQAYPETYKELLELEKVNDGTTGAKWVDIDGNNSLVVVIGTRGRERGVIIESASYIAEGEGNSE*