Scaffold Ga0066831_10003231

Overview

Basic Information

• Taxon OID: 3300005516
• Scaffold ID: Ga0066831_10003231
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4482
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F045140	Metagenome / Metatranscriptome	153	Y
F080506	Metagenome / Metatranscriptome	115	N
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066831_100032313	F045140	GAG	MIRLLTIFLLSASIAQAVSLEIKLAYQKVTEKGRPYGSPGGIYFEIKDIDPFLPYWVQYSHDLKIWEDLYNFGSFGTNSTSPLFHWNELPPGKCFFRIVQKY*
Ga0066831_100032314	F087296	N/A	MITLTKAARVAQEVNEEEANVEYSEWVLKWQLLESDMMFNVPWKKLYERVGLTKTMSGPSTCRWSIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKVRRF*
Ga0066831_100032315	F080506	AGGAG	MTLEEAVRIGKGVDLTTIEECVNNIHSFSPQIFPYNKINEELTELYEEYDNYKKHPETWMEALCGMKA*
Ga0066831_100032319	F013467	GAGG	MSTDMTNWVWCEECLEWKDAGEEVSFVNIEEDSFGKDLMTFLCDKCEKENKNNIIISDKKPRCK*