Scaffold Ga0066866_10059693

Overview

Basic Information

• Taxon OID: 3300005514
• Scaffold ID: Ga0066866_10059693
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1433
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066866_100596932	F022555	AGGAG	MAITPKFKPGQLVRYSQGLHDLVGLVKSTQLARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*
Ga0066866_100596933	F006383	GGAGG	MLDSADKMWAVQQPGTLLRARHSAKYGQLALVLEEAYDGPMPTNGYPPRRYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGAEEN*
Ga0066866_100596934	F021674	GGTGG	MERETYNTRLRSNPEDIPVGSLLRVKKWCRKNDTIKNNGEFAILVERPGGTYISHDIIFPNGARTIFVPMNWEVVSYAG*