Scaffold Ga0074648_1054449

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1054449
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016061	Metagenome	250	Y
F026258	Metagenome / Metatranscriptome	198	Y
F028350	Metagenome / Metatranscriptome	192	Y
F079995	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10544491	F016061	AGGAG	MFVKVKAINILNALTGTKPTIDRQNVRSFNHMGKYYVGASASGKFLQVNDGKHIRYYGNPFWNLYRVVSKN
Ga0074648_10544493	F028350	GAGG	MRIKPNSVNPIAKAMLQTNRRRSQVVPDKTKYNRKKEKDLANQNRSNEELEDPKG*
Ga0074648_10544494	F079995	AGCAGG	MKHFISHWELQPDTQNTWASVNCANGRAEIIKHMGCWMLEIRFDSGKAHVSSHNTRDEAMRQAEYQAVWTVEFA*
Ga0074648_10544495	F026258	GGAG	MLPDTQHNREQAFEHMYGIPKEWLDELLDDWRDPMMGGLTMLAMSMLSDAQECIAIGQDNTARQYINRAKYVIRQTREQVK*