Scaffold Ga0074648_1040451

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1040451
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2173
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F068594	Metagenome	124	Y
F069852	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10404516	F069852	GAGG	MKIKVTKEDIENGEPGNSSECAISLALQRHYNTNNTFVSGAFDKDEPDIRVDDIPLKVCEKDIDNVGSFIDLFDDYVFNEDVVIDKSCIPQPFEFEIMEGK*
Ga0074648_10404517	F068594	AGGGGG	MKEYTFWQEVKKYVREECVIKANSFDEALEIHNEGGADYKEVHCFDEEITDEGTDENKSY
Ga0074648_10404518	F005373	GGGGG	MNEGLENINQIEDLEKKVLTLSSLLSQMCCHADEDTPAEYRTKHFRSTMDESYEYLEEIGYLKGDR*