Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1027177 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1027177 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	2987
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2987

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006331	Metagenome / Metatranscriptome	376	N
F009001	Metagenome	324	Y
F032086	Metagenome	181	Y
F047385	Metagenome / Metatranscriptome	150	Y
F048963	Metagenome / Metatranscriptome	147	N
F057323	Metagenome	136	N
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10271771	F068778	N/A	DWGVFAEVEDSTDSELTQQIELVLPDHIQQEIYKLITDNIDQAKAVEAMAQF*
Ga0074648_102717710	F048963	AGGA	VNETYADFEPTDLPFDWSGVDHEEIKRGFDFFYANNQITGFKMDENGNYVRDQDGKLIAYRTSKQRHQPKSWFNNYYQ*
Ga0074648_102717711	F006331	N/A	MSKENEANRESLSNEESKDDGSKATRGPTWRMREWGRTAYRNRQAKLRMDGESSKTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTVLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPH
Ga0074648_10271773	F047385	N/A	MKIEQPTDNSLYVTIGNYVYYFDDSIDGENIVARWHLDDEETDIKEDLQLDNQLLNRS*
Ga0074648_10271774	F057323	N/A	MKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKDNDIKITLPDHVTDTYSFMDWFYDSENSLEGCYDFFVSLQYKELLSE*
Ga0074648_10271775	F009001	AGGAG	MSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKDVMKQLNRSLPECSSNKESEHDVKRHDEQVRTCDVCDKSLQGMENEGTTCNEHNFNR*
Ga0074648_10271778	F032086	N/A	MTDNPTDQYLDMNDLCDDSLEALIQHYLKLKHRMPDNLSVRERLLELEREQFEREKQTEDNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1027177

Overview

Ecosystem & Geography

Associated Families

Sequences