Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1024676 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1024676 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3216
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3216

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012734	Metagenome / Metatranscriptome	278	Y
F020791	Metagenome / Metatranscriptome	222	Y
F022603	Metagenome / Metatranscriptome	213	Y
F061370	Metagenome / Metatranscriptome	132	Y
F077967	Metagenome / Metatranscriptome	117	N
F104071	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_102467610	F104071	AGGAG	MLNTQQTQTNTDYNTTFTAEQFAKLEALAQEWNAKCEGDYESTFVGGVAHAYCDSGIMTDGLSAADVAMFSKYFTGETIYSAEVSIDELEALVARMEETEWQTDLFKFVDAVNSVLTAEQHKNINSLEAAMSYCWQCCE*
Ga0074648_10246762	F077967	AGGAGG	MMDPKKTFWEDALDVLEGDNEIEQEHVSLDELYDEETKDNHYVEGIDNWEDWN*
Ga0074648_10246763	F020791	GGAGG	MFKAIIFIAIGAVGAYLYMNPGDVDGSLEMLKQGVNKGATVIQEATR*
Ga0074648_10246765	F061370	GAGG	MAKYTEDYSKMTDEEVVMTYNAVMANAYAGDECALEDEMEKRGIDADYLDECRIWANCA*
Ga0074648_10246767	F022603	AGGAG	MQVHILQLQGTGDDEYAWENAAVCANYEDALERLAEINAEYTEADDFVFTLNENARVETHDLVDNNWGL*
Ga0074648_10246769	F012734	AGGAG	MKKQIAYGYWWNCATCGTENAYGLTADEAEEYIRDWEEDNADSVAEGETGEGACDWWYNVTAEENDAHIEDKEKCWKCNAVATKETRTDKAKWFDSIVDNLEKSS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1024676

Overview

Ecosystem & Geography

Associated Families

Sequences