Scaffold Ga0074648_1022978

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1022978
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3399
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N
F047975	Metagenome / Metatranscriptome	149	Y
F055274	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10229781	F010532	AGGAG	MNRTLYKKLEDICAREYILNKLSANKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYESTSMNEQALRGA*
Ga0074648_10229782	F046985	AGGAGG	MIVDTKEELNEWWLEEFGIDVDASKYVEIRVPAKTYAMLVQIDIFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFDRGYLQQATKIWRNILQHLRAFNPIYAEELKSKLFKRRVA*
Ga0074648_10229785	F055274	GAGG	MSDLNNDISNALCNAIDIRETINSNGLSNIKRVHSGTDNEDTLKDLIDDVIYFLEQLNNRGK*
Ga0074648_10229786	F032867	AGGAGG	MDELEKMIDDLIDNHYRVQHLIGTEADESEYLADISEVDDE*
Ga0074648_10229787	F047975	AGGAGG	MTKEEWAENTVDDMDWKDLARIAYDVMLDSVKDMSDKEFQEYLIECGYEED*