Scaffold Ga0074648_1017609

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1017609
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4170
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F006094	Metagenome / Metatranscriptome	382	Y
F020896	Metagenome / Metatranscriptome	221	N
F024295	Metagenome / Metatranscriptome	206	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_101760911	F035125	AGGAG	MKKKITVRFVVEQDFEVEVRDSDLGMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGDMRPVHDSHLFDANLYNLGLHSEYIQPWLFEGQTDKDPYADEKEEEIDNA*
Ga0074648_10176092	F020896	AGGAG	MTKKKEKTQWEINQEQAAATWKSMTAKQQQAVLEMLQAFVPIRQAVSELCDISYDDLRNMDQAWYTLRRLLVDDNVEVKYWNY*
Ga0074648_10176094	F002733	AGGAG	MTKDNTLWIQLTPTEANALMVMLDGEMESRFRYEGLDLKEWETLDLEAYKILAYHKFKTWYMENCSE*
Ga0074648_10176097	F024295	AGGAG	MKYIVELLLTYEVDAPDMRQAQTIAMQRAIDLCDSEDDLFKHIDKDMKCVSSMVRDVSLVDDWPIDRADD*
Ga0074648_10176099	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGRSQQYAEDTAEDWVIGARR*