Scaffold Ga0074648_1017355

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1017355
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4215
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage Eistla EXVC025P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036016	Metagenome	171	N
F069852	Metagenome	123	Y
F100033	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10173554	F100033	N/A	MGGGKVMLEDKHCQIILKNEDEETNKILMDFDLILRTNDKRTQYEYFDVYDYKNNQMVASGIEIKK*
Ga0074648_10173558	F069852	AGGAGG	MKIKVTKEDIENGEPGNSSECAISLALQRHYNTNNTFVSGAFDKDEPDIRVDDIPLKVCEKDINNVGSFINLFDDYVFNEDVVIDETCIPQPFEFEIMEGK*
Ga0074648_10173559	F036016	AGGAG	MMDIETIVAMNKEQGRKARRNGRAPTQFEEEDIIQAEEGLLTPLKKITNLGNYIPKGWKRFNTNELKDQLGLPYDWKFLDNGGLFVDSSGFGSDNEPALSVRQCLETISKLFRIRDDLGFAICSEGQFQLTIGVYEEDK*