Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1015283 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1015283 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4656
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4656

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F007621	Metagenome / Metatranscriptome	348	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017047	Metagenome / Metatranscriptome	243	Y
F017755	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_101528311	F012403	AGGAG	MRIKPINPVAKAMAQSRRRSQTVPDKTKYNRKKDKDDANKSGKDEVVKD*
Ga0074648_101528313	F017047	GGAG	MNTETDYKIELIQTLWDLFKEVHGVRPHGMGYEKYSVADLEWEVAMLQRQLESDLRWEREQEDRAINACMDCGASDIATAMRWLEDAYEMEWV*
Ga0074648_101528314	F017755	GGA	MARKFITPMGRHKPIRSSWQAMDTQAFSRSYEPETRPEFRVYVTGQADAMMATYRKAKDKADALAILDSLL*
Ga0074648_101528316	F007621	N/A	TPNLYLSSYGFTGYKPLERSERGYIPIKPKDSIKEAKMQNSSTQIVPVVNNTLEAEGFALAKEWKSITKGDKARFTKSTKADGFDTRLGKLMLKLKAEGGDRIASARLKDCGIAGIDKRRRSEAMWFVENEAACRDFIKASKKGFTSLTALQAAMKKADKAATEPKAETPVNSEADDKSNVGLNSEAETAQAKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDETKVAA*
Ga0074648_10152834	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVFIQDGAIVDELNLLGHSQQYAEDTAEDWVMGVRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1015283

Overview

Ecosystem & Geography

Associated Families

Sequences