Scaffold Ga0074648_1011430

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1011430
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5781
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047994	Metagenome	149	Y
F056523	Metagenome	137	N
F061371	Metagenome	132	Y
F085897	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_101143011	F085897	GGA	MAMIEPISLDKHLVDCVAEYKKVRQLQYDCEWNGQTEQASIYRNQSVRLKKLIKDGVLYEPKF*
Ga0074648_10114303	F056523	N/A	VLEKNNLHLTKLSNYNQARLEINLAFLNVKGIPTMETKQYLIKSEYDFKNKKFNAVNSCDLTIQFKIMDSCCLVEIVGRYLGRTGEEFKHQIFCHKDQMVSILPTINDQVEKFNEPFNKDRVYINQDIGVVFEEEEKKKEKDYLIGLHGQLDLEELIEEKKGN*
Ga0074648_10114304	F061371	AGG	MKTLSEIDNTIDALKDVSTNALSKHGYSRSRLRMKQLSVNLQQAWEKYKVIHGKTYYKELCLFVICRSSSGLRYKSIIKRSGLSGVVVHDCLSELLKEKLIYSKVINEIDNLKKGSYILYCARKK*
Ga0074648_10114308	F047994	N/A	MSTENVGVRIMSHPMNDKIIDVINDQWTDMSVEDLKDWLVTHRKTNEVADRVYIGLTYLEHKWKQEMFDSYPDS*