Scaffold Ga0074648_1010994

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1010994
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5947
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011052	Metagenome	296	Y
F053651	Metagenome	141	N
F074169	Metagenome	120	N
F087059	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_101099414	F011052	AGGAG	MNIDNYYKQLEGFRIKSYLGESRDGFPQFHLTKPRYKDVLVEVSADGEGNFGGVLFLSEMENV*
Ga0074648_10109945	F087059	N/A	MNIQVIIKNVYGNQLIYPKCDISKAFSNIAKTKTLSIENLKTISSMGYHVEVVNENNIKDLLK*
Ga0074648_10109947	F053651	GGAG	MKYNKKEKILKEIDRRKLQKFEIKTKYRIMKTVLGGNLKYRIQLNKK*
Ga0074648_10109948	F074169	AGGA	MKMKNFIEWKTLFTTKKIIKNPIGNKNILFRRTTNRYGKKGTISHNVGYFYVSRDAETGRFVSRK*