Scaffold Ga0074648_1009247

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1009247
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6728
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034140	Metagenome / Metatranscriptome	175	Y
F048666	Metagenome / Metatranscriptome	148	Y
F106151	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100924717	F034140	GGAGG	MYRVYYVQDTVEHYEGFYETQEEAEEVAQCVSDDYEAERVEVRDRYDNILFVIGDETMVAG*
Ga0074648_100924718	F048666	AGG	MTVSRLVVPLVLVALVFLTGCSSMSAKDVLRTTQSAVNAKNIYANSTVKEEVTWKLRSIYGH*
Ga0074648_10092479	F106151	GAGG	MIKRKIIKAVILMSILVIGVLFGLANKAEADTTQIVPEPKPLHLKVLDIAQTEWNDIKTYQAKNWADGKAQLNRNKEQVSNLFQNIADAISNIVTPDKQ*