Scaffold Ga0074648_1007897

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1007897
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7542
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y
F018717	Metagenome / Metatranscriptome	233	Y
F024348	Metagenome / Metatranscriptome	206	Y
F056899	Metagenome / Metatranscriptome	137	N
F063073	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100789710	F013231	N/A	MINQRNYQTCKLIKNRIDLYLYEMSLLFANLGTDSTVEEHQDAYRREKEYIELIAELDPEKADRLRSSY*
Ga0074648_100789712	F056899	N/A	MSRNTFVKASISGDYGQDIVMKYLKGKGYEVEEAPKKLFYDWDVKATKGDRVVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYRVVGNSATGDDNAEGWIPPLHELLVSRYGYKATIDLTEYA*
Ga0074648_100789714	F063073	N/A	MNLTAEEKSSTPIHSLILDRRKAFAELIRAYLRFNVPSAKKVEVMPNGSLSINDNIFKVDISDYTGIEGGFGYIFFNPSSGRLVIEKDNVRKIYKVEVDLLD*
Ga0074648_100789716	F016811	N/A	MSDGQTIYDVGVRLSWKKKVGNGYTNMHLGTPDRPFQFVTRAKDINAINRNPEMMAKMMSYVGATGKAVYDFYVSEEFYRKEISKSFAHKESDYEKEFGQ*
Ga0074648_100789717	F005010	N/A	MTRKRKHVRELEKFLSMLMIDNVNLTIQASRFGWTEDLQKQIINSALLIRKYQRRLRLIKM*
Ga0074648_100789720	F018717	N/A	MKITVEHYDEKVSIERENDDIDFTEFMELVKRAAHAVGYFDETINKWFNKEK*
Ga0074648_10078978	F008384	AGTAG	MPRYDKAIIEREAIRSAQQGRITEELGKFILQRSIEVAGSAFVTDGNEELKQSLIDAAVMRTCEKFLHYYIKNKSAANLIISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEEGEAVTKLKRYVKDDYLSEKL*
Ga0074648_10078979	F024348	N/A	MILEEYYEDLSDDEANLILDIYHVIDALVYNNEPVSLVRLGFELDIKPQELSDYLPTIVTILNKVEEEYAEVRQGYH*