Scaffold Ga0074648_1007541

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1007541
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7803
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F017727	Metagenome / Metatranscriptome	239	Y
F051564	Metagenome	144	Y
F055274	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100754116	F055274	GGGGG	MKDLYNEITNALCNAIDIKKTIESNGLNNIKRVHSGTDNEDTLQDLIDDVIYFLENLEGVNNES*
Ga0074648_100754120	F017727	AGGAG	MKTIQDRNQALIQRLNGMVRETPISGSFGLLGQLLVDQGLADTRAGAIDAATRLETYPKYTVSESELTSAILRCDGSNFPWLLKIAPRLIKICLENRIDVALIERTEDAFNQLDRRAS*
Ga0074648_10075416	F051564	AGGAGG	MSIPKQMIREWCETYEEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNVCKERS*
Ga0074648_10075417	F008887	AGGAGG	MNRGCCNECGYKADYIIDNNNYADNGYENLDQVPTDKMLCGVCYEEEVANVNT*