Scaffold Ga0074648_1006871

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1006871
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8312
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F007621	Metagenome / Metatranscriptome	348	Y
F011124	Metagenome / Metatranscriptome	295	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F037204	Metagenome	168	N
F046340	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100687115	F012403	GGAG	MRIRPINPVAKAVAQSRRRATIVPDKTKYNRKKDKDDANKSRKDEVTQD*
Ga0074648_100687116	F037204	GGAG	MNIEIYKSLSMYDYAMDVYQKAMHMKHDHNVEHYDVQEIINYLQFIHDSEKGNAY*
Ga0074648_100687122	F017755	GGAG	MARKFITPMGRHKPVRSSWAAMDNKAFSRVYEPETRPEFRCYVTGQADAMLDTYRKAKDKADALAILDSLL*
Ga0074648_100687124	F007621	GAGG	MTNSIVKIAEINTLEAEGLALAKEWKSITKADKARFTKATSAEGFDTRLGKLMLALKAESNGRISSARLKDCGIHSIDKRRRSEAMWFVENEADCREFIKASKKGFTSLTALQAAMRKADKASEPKADTHTEPKAEAESNVGLNSEAEQSPFAEKSASDIALDALVQCEVNGITVKDFMLALKEQLEMLDTNKAVA*
Ga0074648_10068716	F046340	GGAG	MSDNYDSGFDLVLSDYERRDLIAHYETDSLPDYLSCNDDDMWYGYQIGDRMFDLNVWTDYGDIPDKEKIVCTVYECDWINDNWQTNCRHSWTLTEDNDT*
Ga0074648_10068717	F006094	AGGAG	MLLHEFYSDEDCSRGMGAYRKATVFLEPDGSHTVYMMQDGAIIEERNIKGHSEVYAENCAENWVLGVI*
Ga0074648_10068718	F011124	AGGAG	MFDIGKSYSVVVWDMPVAVLDIELDDYIRNEDGTVKLFNIPNYDYSYICDDVDVDELQERDKGDDYDVTT*