Scaffold Ga0074648_1006868

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1006868
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8314
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001139	Metagenome / Metatranscriptome	767	Y
F001476	Metagenome / Metatranscriptome	688	Y
F023998	Metagenome / Metatranscriptome	208	N
F025274	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100686813	F023998	AGGAG	MSKVKINNKHAKRPTQASSMRAARQDPGLAGDSTVIELMERSGDRDQMTIIKILHEEWALNQGLRPKRQAASIKRQAASLKHLPRYQASDYVAQTEERQAMTIIPYN*
Ga0074648_100686816	F001139	AGGAGG	MRIKHNDLAWYFIRPHDQLPDAYLRSCNKFFKELSDKQQASSNKRQAVTLHKPGTRVKNRFNRKV*
Ga0074648_100686818	F025274	AGGAG	MEEKTIDTYSMLGKPIKNTKQQWVDRWKDCTVSSLSGLMPIEEYRDLVDRIITLAGEDFDRRAK*
Ga0074648_10068682	F001476	GGAG	MSTNKTIVVNNYKKYWIEDTKQGHLIKICYGDKDQVMELDLRWNNRRRDNDNRVNYVKIKNYT*