Scaffold Ga0074648_1006005

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1006005
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9147
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036487	Metagenome	170	Y
F068784	Metagenome	124	Y
F098261	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10060052	F098261	N/A	MGLMDIDQLIDMIKERSRLDIYYTPQFSFKGSAEQKKEFQTYLCDTAEVKWVDILKSIQREYSDMKVDQVIDMIEDDTFMGIKVVYKPITTFSKWDRWEDGYIEGYLRTMTSPDYFIWSYHKMGKLKSLLSDFPELKLLGRT*
Ga0074648_10060053	F036487	N/A	MKEYATDYTRGWSEGFKAGWKASLEEMKARLKQYKEAEQGFSEYQQAMDEAIELIDWLSGNKSKKLDN*
Ga0074648_10060055	F068784	GGA	MEKGYTLPLGQKLNPQHNPHTMDYQKLYRHMAIEHGLFLLDSQMEEIVDIVLEMHNENPEKCTMKTAVKELYEILWETDKDKFTWIAILDDILEKEKEQIVNAYKKGCFDGGFFDEKWDEERAKEYYNETYGGQ*