Scaffold Ga0074648_1004890

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1004890
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10525
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100489011	F014085	AGGAGG	MDNLSEMREQALKRAGNVCEWAYCTDNKWLELAHIKGIGMGGSKKRKFDFDNVAILCKHHHDIYDGRQRVGTSIAYRELLMGYLQRESKTI*
Ga0074648_100489016	F025614	AGGA	MSEKIDITKINIFTNPKFMKVWAKQFDHACGSDTFNVAPNMIKLRFLMDKFVKDYNWHLSQLEEE*
Ga0074648_100489025	F010091	N/A	MTIVKYMNIDKLLEEAETGKRSAIVDRITDEAKPFWQGCEERVAAGRELKPYVVSRLLRDEFGIKISESAVRNHFQNIAETNE*
Ga0074648_10048905	F023355	N/A	MALPGAYVNRSNTPGQYCANCKYYSNNYCIAFKEQVAPYGWCKAWKGVEDEIRST*