Scaffold Ga0074648_1003602

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1003602
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12941
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010653	Metagenome / Metatranscriptome	301	Y
F011890	Metagenome	286	Y
F017421	Metagenome / Metatranscriptome	241	Y
F043151	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100360218	F043151	AGGA	MIPYTDEEQNWVSTGSYRKSNLNRERRARREPDLRKHDWAIRTTIEVDGKTYVVPVQV*
Ga0074648_100360219	F010653	N/A	MLLRTALLYMIMTVSAVAFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRGIVYEEIQHIRSEIQRVVDLLVTHDQAQHPQP*
Ga0074648_10036024	F011890	AGGAG	MKKLRLALLFLILATSARAETQESITLINSGKAGGSFNARTLMYKEGLIAAGYSVKFENIGKISQAVKMFKESNEPTIMVYANNQVYNQDLFHTNDNFIMAEYKQPLYVCRTNHSKDKKGKLTVAHGKGYDPRLLTALLGDGVTLVPYKNSSAMLKGILGGDVDMMVNNQDNSFKYIESGHGTCEASDVLPVMVATVIGNNIDVQAIREVIFDITMDIKFIEYHRSRKLVRPTGTWKDELILTQELEKGYEVK*
Ga0074648_10036026	F017421	N/A	MYTLEKRKMIYIMTRKPVWYHTHCLTPWKGSPLWYDPNWVIGDCELCRMDVQGQDWWNGCTYKNSQKRIFDTLDLTKKYWF*