Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1002936 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1002936 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	14907
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14907

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023961	Metagenome / Metatranscriptome	208	Y
F037431	Metagenome / Metatranscriptome	168	Y
F094092	Metagenome	106	N
F101484	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100293610	F094092	GAG	MGKKERNIGTMLKPLDSHKPADSVTFIPHERPDILRRLKEIKFDTADRLSANYMDLDWFGFEAISVYERNGKIVGFSSVAHREEYFDKDEARILNRYYESPDMRRTSKIIGDDHVCEMVAQQIDIAKKLGYKKVFISRSRSPRHLEMFIENVGIKTKTTWHMEDKKIAVCNPKNPECWQFKVWTEI*
Ga0074648_100293614	F023961	GGAGG	MPNFIQTDHTPDVGLLRAYMKDAWEDSNELYKEYMSWENNKFFVQEIKDFDRPLLREIKKIWNHIGIRPREWRCNFFRVLPGGELPLHVDVLSKCSVVIPMTEMTGELYFEDGTEVLYQNMTVINTKVAHGVKSPTKERIVFHMGIHDVPFEEIKIGHNS*
Ga0074648_100293616	F037431	AGGA	MPKYKTDRPFTEKQLEAMDVIHDPNTKMFKCQYEDSYVVEDFINGVECGSLDLWFRDNYPKIGYDINDHVYHITFPMLYEVVSDIVRPKIYDHFGNDVIFYSDVSKDPMSVGDQFFKSKRPYGLHTDAVTHLEGYRPYKDIIIPIALEGIHESQYVTFNQRYRGRATHFMKGRIKGSFANYANVIRHQDYEEYGVERIDRSGRDHDVLQKIMPDHIPMSVYEGLTIEKILPWRPRCAIVHDTSVLHAPVDYRAQGCKVKVGLTLHLMKRDPDYNNRLEGYYTPFSRYTKPLIPA*
Ga0074648_10029365	F101484	GGAG	MSELKKLMKFRENIHHFKKDDPGRDKIDQILREAHEMVPTKNNLWAYNIDVYGPEHAEEKEIVAMQTITGYDKRNFAPGGKDHGDYAKLRDIYHRWKERRESMREDPSYENRQRASKVQGYSFNEQVTAPYLLVYYQVPGSPTEKQIQKGYKRLLINYKDNDDWLISASMHGYGTTLLAAEQGLHASFCKCYYFDIGQFTNILSPLKKGYRNVAFLLGIGYRDEELPYFKNPNVPEYKEIVNWK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1002936

Overview

Ecosystem & Geography

Associated Families

Sequences