Basic Information | |
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Taxon OID | 3300005512 Open in IMG/M |
Scaffold ID | Ga0074648_1002836 Open in IMG/M |
Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15253 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (73.53%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005072 | Metagenome / Metatranscriptome | 413 | Y |
F009844 | Metagenome / Metatranscriptome | 312 | Y |
F016666 | Metagenome / Metatranscriptome | 245 | Y |
F042096 | Metagenome / Metatranscriptome | 159 | N |
Protein ID | Family | RBS | Sequence |
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Ga0074648_100283611 | F005072 | AGG | MSEMLIQAIKKQINNYKDNLGKNLLSKGVENIQEFKRIHGMSQGLDKSLEIINETLEKYRKGNIEEDD* |
Ga0074648_10028363 | F042096 | AGGAGG | MAGSDIFANSTSTTGSNVALFGGPTRLKAFIITPTAASGSVVFADGDVTKFTVTTGASADSGPINISLPDEGVKFSSSLQANLTNVGGVTVFFA* |
Ga0074648_100283631 | F016666 | GGAGG | MMDRKMKNYSVADVAAANKRFYEKYPGCKEDAAMLKKAMLNPGDEIVKEVEAEQEARAKMMSKLEIEIEVS* |
Ga0074648_10028369 | F009844 | AGTAG | MADLRGQMQKTSEYVESQPKKEDKKEVNTPPLARDWVKMNAKWFNKPGFRKETAMAYGIDAELTEEGWDVNDPEYYEEMDRRLKASGLKHFTKSDENTSNDDQNVVQKANRVQSPVAGVSRKKTSNSNRVKLTADDLATARNFGIDINDEAALKRFAKEVKNFSTNT* |
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