Scaffold Ga0074648_1002015

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1002015
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 19265
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (82.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F003051	Metagenome / Metatranscriptome	510	Y
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y
F024920	Metagenome	204	Y
F046985	Metagenome	150	N
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10020151	F003051	GAGG	MKTKILKNKVTIDMSVSEYDTLFKYIGKLDSILNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK*
Ga0074648_100201510	F046985	AGGAG	MSSLLELYNESWSKEFDVDVDATKSIKVHIAPKTYAMLVQIGVFNIHSKGIHDDVRKVNVKAIDINTDFSVNMLLNNYEAMKMAEMLNEYPFERGYQQQADKIWYNILKHLNEFNPKDAEHLRNKLFKRRVA*
Ga0074648_100201513	F066266	AGGAG	MSILNEHELEKKIVYTIKEKIQDALAYRTYDRRTNKSCHQDYRKTIRDAKDFDELKRIMSEFVDDLMHI*
Ga0074648_100201515	F007645	AGGAG	MAKYVYGKRDTKTVKSIYDRATMGEKAIWNFANSLGVNIVRVRKNKERNETTVGDTFLGYHSGKVSIYQQRGNPSKPLHFVRPTPLGKDNKGMQILEVANNLDVQEVLEALKDYQILMTGSFFGRMKLRFARLFS*
Ga0074648_100201520	F009922	AGGAG	MENTFDINSFDKDRTSAPASFKQCQAIGYKFAKKGTKMNWKLQKQIQGCLYSLAKDERLTFKKAHTILQGKSLPKVYLDKIALYLKENS*
Ga0074648_100201524	F001521	GAGG	MTMTKLWITEFVNEEGIGLGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTKVKERTLH*
Ga0074648_10020159	F024920	AGGAG	MIVELLDKYHVDDFDNLLIEIIKHMKEQKELRGEQDDE*